Glyma13g43920 - SoyBase

SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g43920

Feature Type:	gene_model
Chromosome:	Gm13
Start:	43466822
stop:	43470611
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g43920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G80300	AT	Annotation by Michelle Graham. TAIR10: nucleotide transporter 1 \| chr1:30191954-30194280 FORWARD LENGTH=624	SoyBase	E_val: 0	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005471	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP:ADP antiporter activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
PF03219	PFAM	TLC ATP/ADP transporter	JGI		ISS
UniRef100_B9GWP1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP/ADP transporter n=1 Tax=Populus trichocarpa RepID=B9GWP1_POPTR	SoyBase	E_val: 0	ISS
UniRef100_I1M5Q4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M5Q4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g43920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g43920

Paralog	Evidence	Comments
Glyma15g01420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g43920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g362300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g43920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g43920

Limit To All Plant Sequences

>Glyma13g43920.1   sequence type=CDS   gene model=Glyma13g43920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGCTGTTCTTCAAACCAGAGGCCTTCTCTCTCTCCCCGCAAACCCCGTTAACAGAATCTCACTCTTTAACCCTTCACAAGGTTTAAAGCACAGATTTTTCTCTCCAAAGCCAAAAAACCTTTCTGGGTCTTCTCTTTCCTCCAATGGGTTCCCAAAACTCTCACCAAGACCCAACAATGTCTTTGCCCAAAGGGACCAAAACAAAAACTTGTTCTTGTGCAGGGCTGAGGCTGCTGCAGCCTCCTTTGGGGAACCAGAAAGTGAGAAACAAAAGTTTTTGGGTATTGAAGTTGCCACCTTGAAGAAGATTGTGCCTCTGGGGATGATGTTCTTTTGCATCCTCTTCAACTATACAATCTTAAGGGACACAAAAGATGTGTTGGTTGTGACGGCCAGAGGAAGCAGTGCTGAGATTATACCGTTTCTCAAAACCTGGGTGAACCTTCCCATGGCCATTGGGTTCATGTTATTGTACACAAAGTTGGCTAATGTGTTGTCCAAGCAGGCTCTCTTCTACTCTATTATTCTTCCCTTCATTGCCTTCTTTGGGGCCTTTGGTTTTGTTTTGTACCCTCTCAGCAACTATATTCACCCTGAGGCTTTTGCGGATAAGCTTCTCAACATCCTTGGCCCACGGTTCCTTGGTCCTCTTGCAATTATGAGAATATGGAGCTTCTGTTTGTTCTATGTCATGGCTGAATTGTGGGGGAGTGTGGTCATTTCAGTGCTGTTTTGGGGGTTTGCCAATCAGATTACTACCATTGATGAAGCAAAAAGATTCTATCCTCTATTTGGACTTGGGGCCAATGTAGCCCTTGTGTTCTCTGGTCGGACAGTGAAATACTTTTCTAATCTGAGGAGTACTTTAGGTCCTGGAGTTGATGGTTGGGCCATCTCTCTGAAAGCAATGATGAGCATAGTTGTGGGCATGGGATTTGCAATCTGTTTCCTGTATTGGTGGGTGAACAATTATGTTCCTCTTCCTACACGTAGCAAGAAGAAGAAGGAGAAGCCCAAGATGGGAACAATGGAGAGCATTAAGTTCTTGGTGTCTTCAAAATATATAAGGGATCTTGCCACTTTAGTGGTTGCATATGGAATTAGCATTAATCTTGTTGAGGTTACATGGAAATCAAAGCTCAAAGCTCAGTTTCCAAGCCCCAACGAGTACTCATCTTTTATGGGAGACTTCTCAACTGCAACTGGAATTGCTACATTCATAATGATGCTTCTAAGTCAATTTATATTTGACAAATATGGGTGGGGAGTTGCTGCCAAGATCACCCCCACCGTCCTGCTTTTGACAGGAGTTGGTTTCTTTTCTCTTATATTATTTGGTGGCCCAATTGCTCCTGTTATTGCAAAGTTTGGAATGACTCCACTGCTAGCTGCTGTATATGTGGGTGCCATGCAGAACATATTCAGCAAGAGTGCTAAGTACAGTTTATTCGATCCATGCAAAGAAATGGCCTACATACCCTTGGATGAGGATACCAAGGTCAAGGGGAAGGCAGCCATTGATGTTGTGTGCAACCCATTGGGGAAATCTGGAGGAGCTCTAATTCAGCAGTTCATGATCTTAACTTTTGGTTCACTAGCTAACTCAACTCCGTACCTAGGAGGGGTCCTTCTGGTGATTGTTCTTGCCTGGTTATCAGCAGCCAAGTCGCTTGATACACAGTTTACTGCCTTGCGTCGAGAAGAAGAACTTGAGAAAGAGATGGAGAGAGCAGCAGCTGTTAAGATACCAGTGGTGGCCAAGGATGAGGATGGAAATGGTTCTCTTAAAAGTGTTCCACTGTTAAATCCAACAGCTGGTGACTCCTCAAGTACATTGAATTGA

Predicted protein sequences of Glyma13g43920

Limit To All Plant Sequences

>Glyma13g43920.1   sequence type=predicted peptide   gene model=Glyma13g43920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAVLQTRGLLSLPANPVNRISLFNPSQGLKHRFFSPKPKNLSGSSLSSNGFPKLSPRPNNVFAQRDQNKNLFLCRAEAAAASFGEPESEKQKFLGIEVATLKKIVPLGMMFFCILFNYTILRDTKDVLVVTARGSSAEIIPFLKTWVNLPMAIGFMLLYTKLANVLSKQALFYSIILPFIAFFGAFGFVLYPLSNYIHPEAFADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTIDEAKRFYPLFGLGANVALVFSGRTVKYFSNLRSTLGPGVDGWAISLKAMMSIVVGMGFAICFLYWWVNNYVPLPTRSKKKKEKPKMGTMESIKFLVSSKYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFIMMLLSQFIFDKYGWGVAAKITPTVLLLTGVGFFSLILFGGPIAPVIAKFGMTPLLAAVYVGAMQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLANSTPYLGGVLLVIVLAWLSAAKSLDTQFTALRREEELEKEMERAAAVKIPVVAKDEDGNGSLKSVPLLNPTAGDSSSTLN*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain